sparseMatrixStats

DOI: 10.18129/B9.bioc.sparseMatrixStats  

Summary Statistics for Rows and Columns of Sparse Matrices

Bioconductor version: Release (3.16)

High performance functions for row and column operations on sparse matrices. For example: col / rowMeans2, col / rowMedians, col / rowVars etc. Currently, the optimizations are limited to data in the column sparse format. This package is inspired by the matrixStats package by Henrik Bengtsson.

Author: Constantin Ahlmann-Eltze [aut, cre]

Maintainer: Constantin Ahlmann-Eltze <artjom31415 at googlemail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sparseMatrixStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sparseMatrixStats")

 

HTML	R Script	sparseMatrixStats
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataRepresentation, Infrastructure, Software
Version	1.10.0
In Bioconductor since	BioC 3.11 (R-4.0) (3 years)
License	MIT + file LICENSE
Depends	MatrixGenerics(>= 1.5.3)
Imports	Rcpp, Matrix, matrixStats (>= 0.60.0), methods
LinkingTo	Rcpp
Suggests	testthat (>= 2.1.0), knitr, bench, rmarkdown, BiocStyle
SystemRequirements	C++11
Enhances
URL	https://github.com/const-ae/sparseMatrixStats
BugReports	https://github.com/const-ae/sparseMatrixStats/issues
Depends On Me
Imports Me	atena, DelayedMatrixStats, GSVA, SimBu
Suggests Me	MatrixGenerics, scPCA, Voyager
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	sparseMatrixStats_1.10.0.tar.gz
Windows Binary	sparseMatrixStats_1.10.0.zip
macOS Binary (x86_64)	sparseMatrixStats_1.10.0.tgz
macOS Binary (arm64)	sparseMatrixStats_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/sparseMatrixStats
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/sparseMatrixStats
Bioc Package Browser	https://code.bioconductor.org/browse/sparseMatrixStats/
Package Short Url	https://bioconductor.org/packages/sparseMatrixStats/
Package Downloads Report	Download Stats