MatrixGenerics

DOI: 10.18129/B9.bioc.MatrixGenerics  

S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

Bioconductor version: Release (3.16)

S4 generic functions modeled after the 'matrixStats' API for alternative matrix implementations. Packages with alternative matrix implementation can depend on this package and implement the generic functions that are defined here for a useful set of row and column summary statistics. Other package developers can import this package and handle a different matrix implementations without worrying about incompatibilities.

Author: Constantin Ahlmann-Eltze [aut] , Peter Hickey [aut, cre] , Hervé Pagès [aut]

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MatrixGenerics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, Software
Version	1.10.0
In Bioconductor since	BioC 3.11 (R-4.0) (3 years)
License	Artistic-2.0
Depends	matrixStats (>= 0.60.1)
Imports	methods
LinkingTo
Suggests	sparseMatrixStats, DelayedMatrixStats, SummarizedExperiment, testthat (>= 2.1.0), Matrix
SystemRequirements
Enhances
URL	https://bioconductor.org/packages/MatrixGenerics
BugReports	https://github.com/Bioconductor/MatrixGenerics/issues
Depends On Me	DelayedArray, DelayedMatrixStats, GenomicFiles, sparseMatrixStats, SummarizedExperiment, VariantAnnotation
Imports Me	CoreGx, crisprDesign, escape, glmGamPoi, imcRtools, lineagespot, miaSim, MinimumDistance, PDATK, RaggedExperiment, scone, scPCA, TENxIO, tLOH, transformGamPoi, VanillaICE
Suggests Me	MungeSumstats
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MatrixGenerics_1.10.0.tar.gz
Windows Binary	MatrixGenerics_1.10.0.zip
macOS Binary (x86_64)	MatrixGenerics_1.10.0.tgz
macOS Binary (arm64)	MatrixGenerics_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MatrixGenerics
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MatrixGenerics
Bioc Package Browser	https://code.bioconductor.org/browse/MatrixGenerics/
Package Short Url	https://bioconductor.org/packages/MatrixGenerics/
Package Downloads Report	Download Stats