mdqc

DOI: 10.18129/B9.bioc.mdqc  

Mahalanobis Distance Quality Control for microarrays

Bioconductor version: Release (3.16)

MDQC is a multivariate quality assessment method for microarrays based on quality control (QC) reports. The Mahalanobis distance of an array's quality attributes is used to measure the similarity of the quality of that array against the quality of the other arrays. Then, arrays with unusually high distances can be flagged as potentially low-quality.

Author: Justin Harrington

Maintainer: Gabriela Cohen-Freue <gcohen at mrl.ubc.ca>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mdqc")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mdqc")

 

PDF	R Script	Introduction to MDQC
PDF		Reference Manual

Details

biocViews	Microarray, QualityControl, Software
Version	1.60.0
In Bioconductor since	BioC 2.2 (R-2.7) (15 years)
License	LGPL (>= 2)
Depends	R (>= 2.2.1), cluster, MASS
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	arrayMvout
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mdqc_1.60.0.tar.gz
Windows Binary	mdqc_1.60.0.zip
macOS Binary (x86_64)	mdqc_1.60.0.tgz
macOS Binary (arm64)	mdqc_1.60.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/mdqc
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mdqc
Bioc Package Browser	https://code.bioconductor.org/browse/mdqc/
Package Short Url	https://bioconductor.org/packages/mdqc/
Package Downloads Report	Download Stats