arrayMvout

DOI: 10.18129/B9.bioc.arrayMvout  

multivariate outlier detection for expression array QA

Bioconductor version: Release (3.16)

This package supports the application of diverse quality metrics to AffyBatch instances, summarizing these metrics via PCA, and then performing parametric outlier detection on the PCs to identify aberrant arrays with a fixed Type I error rate

Author: Z. Gao, A. Asare, R. Wang, V. Carey

Maintainer: V. Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("arrayMvout")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("arrayMvout")

 

PDF	R Script	arrayMvout -- multivariate outlier algorithm for expression arrays
PDF		Reference Manual

Details

biocViews	Infrastructure, Microarray, QualityControl, Software
Version	1.56.0
In Bioconductor since	BioC 2.3 (R-2.8) (14.5 years)
License	Artistic-2.0
Depends	R (>= 2.6.0), tools, methods, utils, parody, Biobase, affy
Imports	mdqc, affyContam, lumi
LinkingTo
Suggests	MAQCsubset, mvoutData, lumiBarnes, affyPLM, affydata, hgu133atagcdf
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	arrayMvout_1.56.0.tar.gz
Windows Binary	arrayMvout_1.56.0.zip
macOS Binary (x86_64)	arrayMvout_1.56.0.tgz
macOS Binary (arm64)	arrayMvout_1.56.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/arrayMvout
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/arrayMvout
Bioc Package Browser	https://code.bioconductor.org/browse/arrayMvout/
Package Short Url	https://bioconductor.org/packages/arrayMvout/
Package Downloads Report	Download Stats