biocViews

DOI: 10.18129/B9.bioc.biocViews  

Categorized views of R package repositories

Bioconductor version: Release (3.16)

Infrastructure to support 'views' used to classify Bioconductor packages. 'biocViews' are directed acyclic graphs of terms from a controlled vocabulary. There are three major classifications, corresponding to 'software', 'annotation', and 'experiment data' packages.

Author: VJ Carey <stvjc at channing.harvard.edu>, BJ Harshfield <rebjh at channing.harvard.edu>, S Falcon <sfalcon at fhcrc.org> , Sonali Arora, Lori Shepherd <lori.shepherd at roswellpark.org>

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biocViews")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biocViews")

 

HTML	R Script	biocViews-CreateRepositoryHTML
HTML	R Script	biocViews-HOWTO
PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, Software
Version	1.66.3
In Bioconductor since	BioC 1.8 (R-2.3) (17 years)
License	Artistic-2.0
Depends	R (>= 3.6.0)
Imports	Biobase, graph(>= 1.9.26), methods, RBGL(>= 1.13.5), tools, utils, XML, RCurl, RUnit, BiocManager
LinkingTo
Suggests	BiocGenerics, knitr, commonmark, BiocStyle
SystemRequirements
Enhances
URL	http://bioconductor.org/packages/BiocViews
BugReports	https://github.com/Bioconductor/BiocViews/issues
Depends On Me	Risa
Imports Me	AnnotationHubData, BiocCheck, BiocPkgTools, monocle, RforProteomics, sigFeature
Suggests Me	packFinder
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	biocViews_1.66.3.tar.gz
Windows Binary	biocViews_1.66.3.zip
macOS Binary (x86_64)	biocViews_1.66.3.tgz
macOS Binary (arm64)	biocViews_1.66.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/biocViews
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/biocViews
Bioc Package Browser	https://code.bioconductor.org/browse/biocViews/
Package Short Url	https://bioconductor.org/packages/biocViews/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.16	Source Archive