BiocCheck

DOI: 10.18129/B9.bioc.BiocCheck  

Bioconductor-specific package checks

Bioconductor version: Release (3.16)

BiocCheck guides maintainers through Bioconductor best practicies. It runs Bioconductor-specific package checks by searching through package code, examples, and vignettes. Maintainers are required to address all errors, warnings, and most notes produced.

Author: Bioconductor Package Maintainer [aut], Lori Shepherd [aut], Daniel von Twisk [ctb], Kevin Rue [ctb], Marcel Ramos [aut, cre] , Leonardo Collado-Torres [ctb], Federico Marini [ctb]

Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocCheck")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocCheck")

 

HTML	R Script	BiocCheck: Ensuring Bioconductor package guidelines
PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, Software
Version	1.34.3
In Bioconductor since	BioC 2.14 (R-3.1) (9 years)
License	Artistic-2.0
Depends	R (>= 4.2.0)
Imports	biocViews(>= 1.33.7), BiocManager, stringdist, graph, httr, tools, codetools, methods, utils, knitr
LinkingTo
Suggests	RUnit, BiocGenerics, Biobase, jsonlite, rmarkdown, downloader, devtools (>= 1.4.1), usethis, BiocStyle, callr
SystemRequirements
Enhances	codetoolsBioC
URL	https://github.com/Bioconductor/BiocCheck
BugReports	https://github.com/Bioconductor/BiocCheck/issues
Depends On Me
Imports Me	AnnotationHubData
Suggests Me	GEOfastq, HMP16SData, HMP2Data, packFinder, preciseTAD, scpdata, SpectralTAD
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BiocCheck_1.34.3.tar.gz
Windows Binary	BiocCheck_1.34.3.zip
macOS Binary (x86_64)	BiocCheck_1.34.3.tgz
macOS Binary (arm64)	BiocCheck_1.34.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BiocCheck
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BiocCheck
Bioc Package Browser	https://code.bioconductor.org/browse/BiocCheck/
Package Short Url	https://bioconductor.org/packages/BiocCheck/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.16	Source Archive