basilisk

DOI: 10.18129/B9.bioc.basilisk  

Freezing Python Dependencies Inside Bioconductor Packages

Bioconductor version: Release (3.16)

Installs a self-contained conda instance that is managed by the R/Bioconductor installation machinery. This aims to provide a consistent Python environment that can be used reliably by Bioconductor packages. Functions are also provided to enable smooth interoperability of multiple Python environments in a single R session.

Author: Aaron Lun [aut, cre, cph], Vince Carey [ctb]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("basilisk")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("basilisk")

 

HTML	R Script	Motivation
PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, Software
Version	1.10.2
In Bioconductor since	BioC 3.11 (R-4.0) (3 years)
License	GPL-3
Depends
Imports	utils, methods, parallel, reticulate, dir.expiry, basilisk.utils
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle, testthat, callr
SystemRequirements
Enhances
URL
BugReports	https://github.com/LTLA/basilisk/issues
Depends On Me
Imports Me	BiocSklearn, cbpManager, crisprScore, dasper, densvis, FLAMES, MACSr, MOFA2, Rcwl, recountmethylation, scPipe, SimBu, snifter, spatialDE, VDJdive, velociraptor, zellkonverter
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	basilisk_1.10.2.tar.gz
Windows Binary	basilisk_1.10.2.zip
macOS Binary (x86_64)	basilisk_1.10.2.tgz
macOS Binary (arm64)	basilisk_1.10.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/basilisk
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/basilisk
Bioc Package Browser	https://code.bioconductor.org/browse/basilisk/
Package Short Url	https://bioconductor.org/packages/basilisk/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.16	Source Archive