Rcwl

DOI: 10.18129/B9.bioc.Rcwl  

An R interface to the Common Workflow Language

Bioconductor version: Release (3.16)

The Common Workflow Language (CWL) is an open standard for development of data analysis workflows that is portable and scalable across different tools and working environments. Rcwl provides a simple way to wrap command line tools and build CWL data analysis pipelines programmatically within R. It increases the ease of usage, development, and maintenance of CWL pipelines.

Author: Qiang Hu [aut, cre], Qian Liu [aut]

Maintainer: Qiang Hu <qiang.hu at roswellpark.org>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rcwl")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rcwl")

 

HTML	R Script	Rcwl: An R interface to the Common Workflow Language
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ImmunoOncology, Software, WorkflowStep
Version	1.14.0
In Bioconductor since	BioC 3.9 (R-3.6) (4 years)
License	GPL-2 | file LICENSE
Depends	R (>= 3.6), yaml, methods, S4Vectors
Imports	utils, stats, BiocParallel, batchtools, DiagrammeR, shiny, R.utils, codetools, basilisk
LinkingTo
Suggests	testthat, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me	RcwlPipelines
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Rcwl_1.14.0.tar.gz
Windows Binary
macOS Binary (x86_64)	Rcwl_1.14.0.tgz
macOS Binary (arm64)	Rcwl_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Rcwl
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Rcwl
Bioc Package Browser	https://code.bioconductor.org/browse/Rcwl/
Package Short Url	https://bioconductor.org/packages/Rcwl/
Package Downloads Report	Download Stats