HubPub

DOI: 10.18129/B9.bioc.HubPub  

Utilities to create and use Bioconductor Hubs

Bioconductor version: Release (3.16)

HubPub provides users with functionality to help with the Bioconductor Hub structures. The package provides the ability to create a skeleton of a Hub style package that the user can then populate with the necessary information. There are also functions to help add resources to the Hub package metadata files as well as publish data to the Bioconductor S3 bucket.

Author: Kayla Interdonato [aut, cre], Martin Morgan [aut]

Maintainer: Kayla Interdonato <kayla.morrell at roswellpark.org>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HubPub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HubPub")

 

HTML	R Script	Creating A Hub Package: ExperimentHub or AnnotationHub
HTML	R Script	HubPub: Help with publication of Hub packages
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Infrastructure, Software, ThirdPartyClient
Version	1.6.0
In Bioconductor since	BioC 3.13 (R-4.1) (2 years)
License	Artistic-2.0
Depends
Imports	available, usethis, biocthis, dplyr, aws.s3, fs, BiocManager, utils
LinkingTo
Suggests	AnnotationHubData, ExperimentHubData, testthat, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
BugReports	https://github.com/Bioconductor/HubPub/issues
Depends On Me
Imports Me
Suggests Me	AnnotationHub, AnnotationHubData, ExperimentHub, ExperimentHubData
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HubPub_1.6.0.tar.gz
Windows Binary	HubPub_1.6.0.zip
macOS Binary (x86_64)	HubPub_1.6.0.tgz
macOS Binary (arm64)	HubPub_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/HubPub
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HubPub
Bioc Package Browser	https://code.bioconductor.org/browse/HubPub/
Package Short Url	https://bioconductor.org/packages/HubPub/
Package Downloads Report	Download Stats