tidySummarizedExperiment

DOI: 10.18129/B9.bioc.tidySummarizedExperiment  

Brings SummarizedExperiment to the Tidyverse

Bioconductor version: Release (3.16)

tidySummarizedExperiment is an adapter that abstracts the 'SummarizedExperiment' container in the form of tibble and allows the data manipulation, plotting and nesting using 'tidyverse'

Author: Stefano Mangiola [aut, cre]

Maintainer: Stefano Mangiola <mangiolastefano at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tidySummarizedExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tidySummarizedExperiment")

 

HTML	R Script	Overview of the tidySummarizedExperiment package
PDF		Reference Manual

Details

biocViews	AssayDomain, Clustering, DifferentialExpression, GeneExpression, Infrastructure, Normalization, QualityControl, RNASeq, Sequencing, Software, Transcription, Transcriptomics
Version	1.8.1
In Bioconductor since	BioC 3.12 (R-4.0) (2.5 years)
License	GPL-3
Depends	R (>= 4.0.0), SummarizedExperiment
Imports	tibble (>= 3.0.4), dplyr, magrittr, tidyr, ggplot2, rlang, purrr, lifecycle, methods, plotly, utils, S4Vectors, tidyselect, ellipsis, vctrs, pillar, stringr, cli, fansi
LinkingTo
Suggests	BiocStyle, testthat, knitr, markdown
SystemRequirements
Enhances
URL	https://github.com/stemangiola/tidySummarizedExperiment
BugReports	https://github.com/stemangiola/tidySummarizedExperiment/issues
Depends On Me
Imports Me
Suggests Me	tidybulk
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tidySummarizedExperiment_1.8.1.tar.gz
Windows Binary	tidySummarizedExperiment_1.8.1.zip
macOS Binary (x86_64)	tidySummarizedExperiment_1.8.1.tgz
macOS Binary (arm64)	tidySummarizedExperiment_1.8.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/tidySummarizedExperiment
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tidySummarizedExperiment
Bioc Package Browser	https://code.bioconductor.org/browse/tidySummarizedExperiment/
Package Short Url	https://bioconductor.org/packages/tidySummarizedExperiment/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.16	Source Archive