rpx

DOI: 10.18129/B9.bioc.rpx  

R Interface to the ProteomeXchange Repository

Bioconductor version: Release (3.16)

The rpx package implements an interface to proteomics data submitted to the ProteomeXchange consortium.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rpx")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rpx")

 

HTML	R Script	An R interface to the ProteomeXchange repository
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, ImmunoOncology, MassSpectrometry, Proteomics, Software, ThirdPartyClient
Version	2.6.3
In Bioconductor since	BioC 2.14 (R-3.1) (9 years)
License	GPL-2
Depends	methods
Imports	BiocFileCache, jsonlite, xml2, RCurl, curl, utils
LinkingTo
Suggests	Biostrings, BiocStyle, testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/lgatto/rpx
BugReports	https://github.com/lgatto/rpx/issues
Depends On Me
Imports Me
Suggests Me	MsExperiment, MSnbase, PSMatch, RforProteomics
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rpx_2.6.3.tar.gz
Windows Binary	rpx_2.6.3.zip (64-bit only)
macOS Binary (x86_64)	rpx_2.6.3.tgz
macOS Binary (arm64)	rpx_2.6.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rpx
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rpx
Bioc Package Browser	https://code.bioconductor.org/browse/rpx/
Package Short Url	https://bioconductor.org/packages/rpx/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.16	Source Archive