rnaseqcomp

DOI: 10.18129/B9.bioc.rnaseqcomp  

Benchmarks for RNA-seq Quantification Pipelines

Bioconductor version: Release (3.16)

Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-condition quantifications for genes, transcripts, junctions or exons by each pipeline with necessary meta information should be organized into numeric matrices in order to proceed the evaluation.

Author: Mingxiang Teng and Rafael A. Irizarry

Maintainer: Mingxiang Teng <tengmx at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rnaseqcomp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rnaseqcomp")

 

HTML	R Script	The rnaseqcomp user's guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	QualityControl, RNASeq, Software, Visualization
Version	1.28.0
In Bioconductor since	BioC 3.2 (R-3.2) (7.5 years)
License	GPL-3
Depends	R (>= 3.2.0)
Imports	RColorBrewer, methods
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/tengmx/rnaseqcomp
Depends On Me
Imports Me
Suggests Me	SummarizedBenchmark
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rnaseqcomp_1.28.0.tar.gz
Windows Binary	rnaseqcomp_1.28.0.zip
macOS Binary (x86_64)	rnaseqcomp_1.28.0.tgz
macOS Binary (arm64)	rnaseqcomp_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rnaseqcomp
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rnaseqcomp
Bioc Package Browser	https://code.bioconductor.org/browse/rnaseqcomp/
Package Short Url	https://bioconductor.org/packages/rnaseqcomp/
Package Downloads Report	Download Stats