rawrr

DOI: 10.18129/B9.bioc.rawrr  

Direct Access to Orbitrap Data and Beyond

Bioconductor version: Release (3.16)

This package wraps the functionality of the RawFileReader .NET assembly. Within the R environment, spectra and chromatograms are represented by S3 objects (Kockmann T. et al. (2020) ). The package provides basic functions to download and install the required third-party libraries. The package is developed, tested, and used at the Functional Genomics Center Zurich, Switzerland .

Author: Christian Panse [aut, cre] , Tobias Kockmann [aut]

Maintainer: Christian Panse <cp at fgcz.ethz.ch>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rawrr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rawrr")

 

HTML	R Script	Direct Access to Orbitrap Data and Beyond
PDF		Reference Manual
Text		NEWS
Text		INSTALL

Details

biocViews	MassSpectrometry, Metabolomics, Proteomics, Software
Version	1.6.1
In Bioconductor since	BioC 3.13 (R-4.1) (2 years)
License	GPL-3
Depends	R (>= 4.1)
Imports	grDevices, graphics, stats, utils
LinkingTo
Suggests	BiocStyle(>= 2.5), ExperimentHub, knitr, protViz (>= 0.7), rmarkdown, tartare(>= 1.5), testthat
SystemRequirements	mono-runtime 4.x or higher (including System.Data library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft Windows.
Enhances
URL	https://github.com/fgcz/rawrr/
BugReports	https://github.com/fgcz/rawrr/issues
Depends On Me
Imports Me	MsBackendRawFileReader
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rawrr_1.6.1.tar.gz
Windows Binary	rawrr_1.6.1.zip
macOS Binary (x86_64)	rawrr_1.6.1.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/rawrr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rawrr
Bioc Package Browser	https://code.bioconductor.org/browse/rawrr/
Package Short Url	https://bioconductor.org/packages/rawrr/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.16	Source Archive