qcmetrics

DOI: 10.18129/B9.bioc.qcmetrics  

A Framework for Quality Control

Bioconductor version: Release (3.16)

The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Author: Laurent Gatto [aut, cre]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("qcmetrics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qcmetrics")

 

HTML	R Script	Index file for the qcmetrics package vignette
PDF		Reference Manual

Details

biocViews	ImmunoOncology, MassSpectrometry, Microarray, Proteomics, QualityControl, ReportWriting, Software, Visualization
Version	1.36.0
In Bioconductor since	BioC 2.13 (R-3.0) (9.5 years)
License	GPL-2
Depends	R (>= 3.3)
Imports	Biobase, methods, knitr, tools, xtable, pander, S4Vectors
LinkingTo
Suggests	affy, MSnbase, ggplot2, lattice, mzR, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL	http://lgatto.github.io/qcmetrics/articles/qcmetrics.html
BugReports	https://github.com/lgatto/qcmetrics/issues
Depends On Me
Imports Me	MSstatsQC
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	qcmetrics_1.36.0.tar.gz
Windows Binary	qcmetrics_1.36.0.zip (64-bit only)
macOS Binary (x86_64)	qcmetrics_1.36.0.tgz
macOS Binary (arm64)	qcmetrics_1.36.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/qcmetrics
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/qcmetrics
Bioc Package Browser	https://code.bioconductor.org/browse/qcmetrics/
Package Short Url	https://bioconductor.org/packages/qcmetrics/
Package Downloads Report	Download Stats