pageRank

DOI: 10.18129/B9.bioc.pageRank  

Temporal and Multiplex PageRank for Gene Regulatory Network Analysis

Bioconductor version: Release (3.16)

Implemented temporal PageRank analysis as defined by Rozenshtein and Gionis. Implemented multiplex PageRank as defined by Halu et al. Applied temporal and multiplex PageRank in gene regulatory network analysis.

Author: Hongxu Ding [aut, cre, ctb, cph]

Maintainer: Hongxu Ding <hd2326 at columbia.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pageRank")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pageRank")

 

PDF	R Script	introduction.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneTarget, Network, Software, StatisticalMethod
Version	1.8.0
In Bioconductor since	BioC 3.12 (R-4.0) (2.5 years)
License	GPL-2
Depends	R (>= 4.0)
Imports	GenomicRanges, igraph, motifmatchr, stats, utils, grDevices, graphics
LinkingTo
Suggests	bcellViper, BSgenome.Hsapiens.UCSC.hg19, JASPAR2018, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, TFBSTools, GenomicFeatures, annotate
SystemRequirements
Enhances
URL	https://github.com/hd2326/pageRank
BugReports	https://github.com/hd2326/pageRank/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	pageRank_1.8.0.tar.gz
Windows Binary	pageRank_1.8.0.zip
macOS Binary (x86_64)	pageRank_1.8.0.tgz
macOS Binary (arm64)	pageRank_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/pageRank
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pageRank
Bioc Package Browser	https://code.bioconductor.org/browse/pageRank/
Package Short Url	https://bioconductor.org/packages/pageRank/
Package Downloads Report	Download Stats