oppti

DOI: 10.18129/B9.bioc.oppti  

Outlier Protein and Phosphosite Target Identifier

Bioconductor version: Release (3.16)

The aim of oppti is to analyze protein (and phosphosite) expressions to find outlying markers for each sample in the given cohort(s) for the discovery of personalized actionable targets.

Author: Abdulkadir Elmas

Maintainer: Abdulkadir Elmas <abdulkadir.elmas at mssm.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("oppti")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("oppti")

 

HTML	R Script	Outlier Protein and Phosphosite Target Identifier
PDF		Reference Manual
Text		NEWS

Details

biocViews	BiomedicalInformatics, DifferentialExpression, GeneExpression, GeneTarget, Network, Proteomics, Regression, Software
Version	1.12.0
In Bioconductor since	BioC 3.10 (R-3.6) (3.5 years)
License	MIT
Depends	R (>= 3.5)
Imports	limma, stats, reshape, ggplot2, grDevices, RColorBrewer, pheatmap, knitr, methods, devtools, parallelDist
LinkingTo
Suggests	markdown
SystemRequirements
Enhances
URL	https://github.com/Huang-lab/oppti
BugReports	https://github.com/Huang-lab/oppti/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	oppti_1.12.0.tar.gz
Windows Binary	oppti_1.12.0.zip (64-bit only)
macOS Binary (x86_64)	oppti_1.12.0.tgz
macOS Binary (arm64)	oppti_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/oppti
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/oppti
Bioc Package Browser	https://code.bioconductor.org/browse/oppti/
Package Short Url	https://bioconductor.org/packages/oppti/
Package Downloads Report	Download Stats