nucleR

DOI: 10.18129/B9.bioc.nucleR  

Nucleosome positioning package for R

Bioconductor version: Release (3.16)

Nucleosome positioning for Tiling Arrays and NGS experiments.

Author: Oscar Flores, Ricard Illa

Maintainer: Alba Sala <alba.sala at irbbarcelona.org>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("nucleR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nucleR")

 

HTML	R Script	Vignette Title
PDF		Reference Manual
Text		NEWS

Details

biocViews	ChIPSeq, Coverage, DataImport, Genetics, Microarray, NucleosomePositioning, QualityControl, Sequencing, Software
Version	2.30.0
In Bioconductor since	BioC 2.9 (R-2.14) (11.5 years)
License	LGPL (>= 3)
Depends	R (>= 3.5.0), methods
Imports	Biobase, BiocGenerics, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, Rsamtools, S4Vectors, ShortRead, dplyr, ggplot2, magrittr, parallel, stats, utils, grDevices
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	nucleR_2.30.0.tar.gz
Windows Binary	nucleR_2.30.0.zip
macOS Binary (x86_64)	nucleR_2.30.0.tgz
macOS Binary (arm64)	nucleR_2.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/nucleR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/nucleR
Bioc Package Browser	https://code.bioconductor.org/browse/nucleR/
Package Short Url	https://bioconductor.org/packages/nucleR/
Package Downloads Report	Download Stats