ncRNAtools

DOI: 10.18129/B9.bioc.ncRNAtools  

An R toolkit for non-coding RNA

Bioconductor version: Release (3.16)

ncRNAtools provides a set of basic tools for handling and analyzing non-coding RNAs. These include tools to access the RNAcentral database and to predict and visualize the secondary structure of non-coding RNAs. The package also provides tools to read, write and interconvert the file formats most commonly used for representing such secondary structures.

Author: Lara Selles Vidal [cre, aut] , Rafael Ayala [aut] , Guy-Bart Stan [aut] , Rodrigo Ledesma-Amaro [aut]

Maintainer: Lara Selles Vidal <lara.selles at oist.jp>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ncRNAtools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ncRNAtools")

 

HTML	R Script	rfaRm
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, FunctionalGenomics, Software, StructuralPrediction, ThirdPartyClient, Visualization
Version	1.8.0
In Bioconductor since	BioC 3.12 (R-4.0) (2.5 years)
License	GPL-3
Depends
Imports	httr, xml2, utils, methods, grDevices, ggplot2, IRanges, GenomicRanges, S4Vectors
LinkingTo
Suggests	knitr, BiocStyle, rmarkdown, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
BugReports	https://github.com/LaraSellesVidal/ncRNAtools/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ncRNAtools_1.8.0.tar.gz
Windows Binary	ncRNAtools_1.8.0.zip (64-bit only)
macOS Binary (x86_64)	ncRNAtools_1.8.0.tgz
macOS Binary (arm64)	ncRNAtools_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ncRNAtools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ncRNAtools
Bioc Package Browser	https://code.bioconductor.org/browse/ncRNAtools/
Package Short Url	https://bioconductor.org/packages/ncRNAtools/
Package Downloads Report	Download Stats