metabolomicsWorkbenchR

DOI: 10.18129/B9.bioc.metabolomicsWorkbenchR  

Metabolomics Workbench in R

Bioconductor version: Release (3.16)

This package provides functions for interfacing with the Metabolomics Workbench RESTful API. Study, compound, protein and gene information can be searched for using the API. Methods to obtain study data in common Bioconductor formats such as SummarizedExperiment and MultiAssayExperiment are also included.

Author: Gavin Rhys Lloyd [aut, cre], Ralf Johannes Maria Weber [aut]

Maintainer: Gavin Rhys Lloyd <g.r.lloyd at bham.ac.uk>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("metabolomicsWorkbenchR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metabolomicsWorkbenchR")

 

HTML	R Script	Example using structToolbox
HTML	R Script	Introduction_to_metabolomicsWorkbenchR
PDF		Reference Manual
Text		NEWS

Details

biocViews	Metabolomics, Software
Version	1.8.0
In Bioconductor since	BioC 3.12 (R-4.0) (2.5 years)
License	GPL-3
Depends	R (>= 4.0)
Imports	data.table, httr, jsonlite, methods, MultiAssayExperiment, struct, SummarizedExperiment, utils
LinkingTo
Suggests	BiocStyle, covr, knitr, HDF5Array, rmarkdown, structToolbox, testthat, pmp, grid, png
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	fobitools
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	metabolomicsWorkbenchR_1.8.0.tar.gz
Windows Binary	metabolomicsWorkbenchR_1.8.0.zip
macOS Binary (x86_64)	metabolomicsWorkbenchR_1.8.0.tgz
macOS Binary (arm64)	metabolomicsWorkbenchR_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/metabolomicsWorkbenchR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/metabolomicsWorkbenchR
Bioc Package Browser	https://code.bioconductor.org/browse/metabolomicsWorkbenchR/
Package Short Url	https://bioconductor.org/packages/metabolomicsWorkbenchR/
Package Downloads Report	Download Stats