logitT

DOI: 10.18129/B9.bioc.logitT  

logit-t Package

Bioconductor version: Release (3.16)

The logitT library implements the Logit-t algorithm introduced in --A high performance test of differential gene expression for oligonucleotide arrays-- by William J Lemon, Sandya Liyanarachchi and Ming You for use with Affymetrix data stored in an AffyBatch object in R.

Author: Tobias Guennel <tguennel at vcu.edu>

Maintainer: Tobias Guennel <tguennel at vcu.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("logitT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("logitT")

 

PDF	R Script	logitT primer
PDF		Reference Manual

Details

biocViews	DifferentialExpression, Microarray, Software
Version	1.56.0
In Bioconductor since	BioC 2.3 (R-2.8) (14.5 years)
License	GPL (>= 2)
Depends	affy
Imports
LinkingTo
Suggests	SpikeInSubset
SystemRequirements
Enhances
URL	http://www.bioconductor.org
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	logitT_1.56.0.tar.gz
Windows Binary	logitT_1.56.0.zip
macOS Binary (x86_64)	logitT_1.56.0.tgz
macOS Binary (arm64)	logitT_1.56.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/logitT
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/logitT
Bioc Package Browser	https://code.bioconductor.org/browse/logitT/
Package Short Url	https://bioconductor.org/packages/logitT/
Package Downloads Report	Download Stats