iCOBRA

DOI: 10.18129/B9.bioc.iCOBRA  

Comparison and Visualization of Ranking and Assignment Methods

Bioconductor version: Release (3.16)

This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. Various types of performance plots can be generated programmatically. The package also contains a shiny application for interactive exploration of results.

Author: Charlotte Soneson [aut, cre]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iCOBRA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCOBRA")

 

HTML	R Script	iCOBRA User Guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	Classification, Software, Visualization
Version	1.26.0
In Bioconductor since	BioC 3.3 (R-3.3) (7 years)
License	GPL (>=2)
Depends	R (>= 4.0)
Imports	shiny (>= 0.9.1.9008), shinydashboard, shinyBS, reshape2, ggplot2 (>= 2.0.0), scales, ROCR, dplyr, DT, limma, methods, UpSetR, markdown
LinkingTo
Suggests	knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL	https://github.com/csoneson/iCOBRA
BugReports	https://github.com/csoneson/iCOBRA/issues
Depends On Me
Imports Me
Suggests Me	muscat, SummarizedBenchmark
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iCOBRA_1.26.0.tar.gz
Windows Binary	iCOBRA_1.26.0.zip
macOS Binary (x86_64)	iCOBRA_1.26.0.tgz
macOS Binary (arm64)	iCOBRA_1.26.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/iCOBRA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/iCOBRA
Bioc Package Browser	https://code.bioconductor.org/browse/iCOBRA/
Package Short Url	https://bioconductor.org/packages/iCOBRA/
Package Downloads Report	Download Stats