ggtreeDendro

DOI: 10.18129/B9.bioc.ggtreeDendro  

Drawing 'dendrogram' using 'ggtree'

Bioconductor version: Release (3.16)

Offers a set of 'autoplot' methods to visualize tree-like structures (e.g., hierarchical clustering and classification/regression trees) using 'ggtree'. You can adjust graphical parameters using grammar of graphic syntax and integrate external data to the tree.

Author: Guangchuang Yu [aut, cre, cph] , Shuangbin Xu [ctb] , Chuanjie Zhang [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ggtreeDendro")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggtreeDendro")

 

HTML	R Script	Visualizing Dendrogram using ggtree
PDF		Reference Manual
Text		NEWS

Details

biocViews	Classification, Clustering, DecisionTree, Phylogenetics, Software, Visualization
Version	1.0.0
In Bioconductor since	BioC 3.16 (R-4.2) (< 6 months)
License	Artistic-2.0
Depends	ggtree(>= 3.5.3)
Imports	ggplot2, stats, tidytree
LinkingTo
Suggests	aplot, cluster, knitr, MASS, mdendro, prettydoc, pvclust, rmarkdown, testthat (>= 3.0.0), treeio, yulab.utils
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ggtreeDendro_1.0.0.tar.gz
Windows Binary	ggtreeDendro_1.0.0.zip
macOS Binary (x86_64)	ggtreeDendro_1.0.0.tgz
macOS Binary (arm64)	ggtreeDendro_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ggtreeDendro
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ggtreeDendro
Bioc Package Browser	https://code.bioconductor.org/browse/ggtreeDendro/
Package Short Url	https://bioconductor.org/packages/ggtreeDendro/
Package Downloads Report	Download Stats