ggspavis

DOI: 10.18129/B9.bioc.ggspavis  

Visualization functions for spatially resolved transcriptomics data

Bioconductor version: Release (3.16)

Visualization functions for spatially resolved transcriptomics datasets stored in SpatialExperiment format. Includes functions to create several types of plots for data from from spot-based (e.g. 10x Genomics Visium) and molecule-based (e.g. seqFISH) technological platforms.

Author: Lukas M. Weber [aut, cre] , Helena L. Crowell [aut]

Maintainer: Lukas M. Weber <lukas.weber.edu at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ggspavis")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggspavis")

 

HTML	R Script	ggspavis overview
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	SingleCell, Software, Spatial, Transcriptomics
Version	1.4.0
In Bioconductor since	BioC 3.14 (R-4.1) (1.5 years)
License	MIT + file LICENSE
Depends	ggplot2
Imports	SpatialExperiment, SingleCellExperiment, SummarizedExperiment, ggside, grid, methods, stats
LinkingTo
Suggests	BiocStyle, rmarkdown, knitr, STexampleData, BumpyMatrix, scater, scran, uwot, testthat (>= 3.0.0)
SystemRequirements
Enhances
URL	https://github.com/lmweber/ggspavis
BugReports	https://github.com/lmweber/ggspavis/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ggspavis_1.4.0.tar.gz
Windows Binary	ggspavis_1.4.0.zip (64-bit only)
macOS Binary (x86_64)	ggspavis_1.4.0.tgz
macOS Binary (arm64)	ggspavis_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ggspavis
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ggspavis
Bioc Package Browser	https://code.bioconductor.org/browse/ggspavis/
Package Short Url	https://bioconductor.org/packages/ggspavis/
Package Downloads Report	Download Stats