geNetClassifier

DOI: 10.18129/B9.bioc.geNetClassifier  

Classify diseases and build associated gene networks using gene expression profiles

Bioconductor version: Release (3.16)

Comprehensive package to automatically train and validate a multi-class SVM classifier based on gene expression data. Provides transparent selection of gene markers, their coexpression networks, and an interface to query the classifier.

Author: Sara Aibar, Celia Fontanillo and Javier De Las Rivas. Bioinformatics and Functional Genomics Group. Cancer Research Center (CiC-IBMCC, CSIC/USAL). Salamanca. Spain.

Maintainer: Sara Aibar <saibar at usal.es>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("geNetClassifier")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("geNetClassifier")

 

PDF	R Script	geNetClassifier-vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	Classification, DifferentialExpression, Microarray, Software
Version	1.38.0
In Bioconductor since	BioC 2.12 (R-3.0) (10 years)
License	GPL (>= 2)
Depends	R (>= 2.10.1), Biobase(>= 2.5.5), EBarrays, minet, methods
Imports	e1071, graphics, grDevices
LinkingTo
Suggests	leukemiasEset, RUnit, BiocGenerics
SystemRequirements
Enhances	RColorBrewer, igraph, infotheo
URL	http://www.cicancer.org
Depends On Me
Imports Me	bioCancer, canceR
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	geNetClassifier_1.38.0.tar.gz
Windows Binary	geNetClassifier_1.38.0.zip
macOS Binary (x86_64)	geNetClassifier_1.38.0.tgz
macOS Binary (arm64)	geNetClassifier_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/geNetClassifier
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/geNetClassifier
Bioc Package Browser	https://code.bioconductor.org/browse/geNetClassifier/
Package Short Url	https://bioconductor.org/packages/geNetClassifier/
Package Downloads Report	Download Stats