fmrs

DOI: 10.18129/B9.bioc.fmrs  

Variable Selection in Finite Mixture of AFT Regression and FMR Models

Bioconductor version: Release (3.16)

The package obtains parameter estimation, i.e., maximum likelihood estimators (MLE), via the Expectation-Maximization (EM) algorithm for the Finite Mixture of Regression (FMR) models with Normal distribution, and MLE for the Finite Mixture of Accelerated Failure Time Regression (FMAFTR) subject to right censoring with Log-Normal and Weibull distributions via the EM algorithm and the Newton-Raphson algorithm (for Weibull distribution). More importantly, the package obtains the maximum penalized likelihood (MPLE) for both FMR and FMAFTR models (collectively called FMRs). A component-wise tuning parameter selection based on a component-wise BIC is implemented in the package. Furthermore, this package provides Ridge Regression and Elastic Net.

Author: Farhad Shokoohi [aut, cre]

Maintainer: Farhad Shokoohi <shokoohi at icloud.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fmrs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fmrs")

 

HTML	R Script	Using fmrs package
PDF		Reference Manual
Text		NEWS

Details

biocViews	DimensionReduction, Regression, Software, Survival
Version	1.8.0
In Bioconductor since	BioC 3.12 (R-4.0) (2.5 years)
License	GPL-3
Depends	R (>= 4.1.0)
Imports	methods, survival, stats
LinkingTo
Suggests	BiocGenerics, testthat, knitr, utils
SystemRequirements
Enhances
URL
BugReports	https://github.com/shokoohi/fmrs/issues
Depends On Me
Imports Me	HhP
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	fmrs_1.8.0.tar.gz
Windows Binary	fmrs_1.8.0.zip (64-bit only)
macOS Binary (x86_64)	fmrs_1.8.0.tgz
macOS Binary (arm64)	fmrs_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/fmrs
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/fmrs
Bioc Package Browser	https://code.bioconductor.org/browse/fmrs/
Package Short Url	https://bioconductor.org/packages/fmrs/
Package Downloads Report	Download Stats