flowStats

DOI: 10.18129/B9.bioc.flowStats  

Statistical methods for the analysis of flow cytometry data

Bioconductor version: Release (3.16)

Methods and functionality to analyse flow data that is beyond the basic infrastructure provided by the flowCore package.

Author: Florian Hahne, Nishant Gopalakrishnan, Alireza Hadj Khodabakhshi, Chao-Jen Wong, Kyongryun Lee

Maintainer: Greg Finak <greg at ozette.com>, Mike Jiang <mike at ozette.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowStats")

 

PDF	R Script	flowStats Overview
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBasedAssays, FlowCytometry, ImmunoOncology, Software
Version	4.10.0
In Bioconductor since	BioC 2.4 (R-2.9) (14 years)
License	Artistic-2.0
Depends	R (>= 3.0.2)
Imports	BiocGenerics, MASS, flowCore(>= 1.99.6), flowWorkspace, ncdfFlow(>= 2.19.5), flowViz, fda (>= 2.2.6), Biobase, methods, grDevices, graphics, stats, cluster, utils, KernSmooth, lattice, ks, RColorBrewer, rrcov, corpcor, mnormt
LinkingTo
Suggests	xtable, testthat, openCyto, ggcyto, ggridges
SystemRequirements
Enhances	RBGL, graph
URL	http://www.github.com/RGLab/flowStats
BugReports	http://www.github.com/RGLab/flowStats/issues
Depends On Me	flowVS, highthroughputassays
Imports Me
Suggests Me	cydar, flowClust, flowCore, flowViz, ggcyto, ncdfFlow, openCyto
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowStats_4.10.0.tar.gz
Windows Binary	flowStats_4.10.0.zip
macOS Binary (x86_64)	flowStats_4.10.0.tgz
macOS Binary (arm64)	flowStats_4.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowStats
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowStats
Bioc Package Browser	https://code.bioconductor.org/browse/flowStats/
Package Short Url	https://bioconductor.org/packages/flowStats/
Package Downloads Report	Download Stats