flowGraph

DOI: 10.18129/B9.bioc.flowGraph  

Identifying differential cell populations in flow cytometry data accounting for marker frequency

Bioconductor version: Release (3.16)

Identifies maximal differential cell populations in flow cytometry data taking into account dependencies between cell populations; flowGraph calculates and plots SpecEnr abundance scores given cell population cell counts.

Author: Alice Yue [aut, cre]

Maintainer: Alice Yue <aya43 at sfu.ca>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowGraph")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowGraph")

 

HTML	R Script	flowGraph
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBasedAssays, FlowCytometry, ImmunoOncology, Software, StatisticalMethod, Visualization
Version	1.6.0
In Bioconductor since	BioC 3.13 (R-4.1) (2 years)
License	Artistic-2.0
Depends	R (>= 4.1)
Imports	effsize, furrr, future, purrr, ggiraph, ggrepel, ggplot2, igraph, Matrix, matrixStats, stats, utils, visNetwork, htmlwidgets, grDevices, methods, stringr, stringi, Rdpack, data.table (>= 1.9.5), gridExtra
LinkingTo
Suggests	BiocStyle, dplyr, knitr, rmarkdown, testthat (>= 2.1.0)
SystemRequirements
Enhances
URL	https://github.com/aya49/flowGraph
BugReports	https://github.com/aya49/flowGraph/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowGraph_1.6.0.tar.gz
Windows Binary	flowGraph_1.6.0.zip (64-bit only)
macOS Binary (x86_64)	flowGraph_1.6.0.tgz
macOS Binary (arm64)	flowGraph_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowGraph
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowGraph
Bioc Package Browser	https://code.bioconductor.org/browse/flowGraph/
Package Short Url	https://bioconductor.org/packages/flowGraph/
Package Downloads Report	Download Stats