flowDensity

DOI: 10.18129/B9.bioc.flowDensity  

Sequential Flow Cytometry Data Gating

Bioconductor version: Release (3.16)

This package provides tools for automated sequential gating analogous to the manual gating strategy based on the density of the data.

Author: Mehrnoush Malek,M. Jafar Taghiyar

Maintainer: Mehrnoush Malek <mmalekes at bccrc.ca>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowDensity")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowDensity")

 

HTML	R Script	Introduction to automated gating
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	Bioinformatics, Cancer, CellBiology, Clustering, DataRepresentation, DensityGating, FlowCytData, FlowCytometry, Software, StemCell
Version	1.32.0
In Bioconductor since	BioC 3.0 (R-3.1) (8.5 years)
License	Artistic-2.0
Depends
Imports	flowCore, graphics, flowViz(>= 1.46.1), car, sp, rgeos, gplots, RFOC, flowWorkspace(>= 3.33.1), methods, stats, grDevices
LinkingTo
Suggests	knitr, rmarkdown
SystemRequirements	xml2, GNU make, C++11
Enhances
URL
Depends On Me
Imports Me	cyanoFilter, ddPCRclust, flowCut
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowDensity_1.32.0.tar.gz
Windows Binary	flowDensity_1.32.0.zip
macOS Binary (x86_64)	flowDensity_1.32.0.tgz
macOS Binary (arm64)	flowDensity_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowDensity
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowDensity
Bioc Package Browser	https://code.bioconductor.org/browse/flowDensity/
Package Short Url	https://bioconductor.org/packages/flowDensity/
Package Downloads Report	Download Stats