fCI

DOI: 10.18129/B9.bioc.fCI  

f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics

Bioconductor version: Release (3.16)

(f-divergence Cutoff Index), is to find DEGs in the transcriptomic & proteomic data, and identify DEGs by computing the difference between the distribution of fold-changes for the control-control and remaining (non-differential) case-control gene expression ratio data. fCI provides several advantages compared to existing methods.

Author: Shaojun Tang

Maintainer: Shaojun Tang <tangshao2008 at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fCI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fCI")

 

HTML	R Script	fCI
PDF		Reference Manual

Details

biocViews	Proteomics, Software
Version	1.28.0
In Bioconductor since	BioC 3.2 (R-3.2) (7.5 years)
License	GPL (>= 2)
Depends	R (>= 3.1), FNN, psych, gtools, zoo, rgl, grid, VennDiagram
Imports
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	fCI_1.28.0.tar.gz
Windows Binary	fCI_1.28.0.zip
macOS Binary (x86_64)	fCI_1.28.0.tgz
macOS Binary (arm64)	fCI_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/fCI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/fCI
Bioc Package Browser	https://code.bioconductor.org/browse/fCI/
Package Short Url	https://bioconductor.org/packages/fCI/
Package Downloads Report	Download Stats