cn.farms

DOI: 10.18129/B9.bioc.cn.farms  

cn.FARMS - factor analysis for copy number estimation

Bioconductor version: Release (3.16)

This package implements the cn.FARMS algorithm for copy number variation (CNV) analysis. cn.FARMS allows to analyze the most common Affymetrix (250K-SNP6.0) array types, supports high-performance computing using snow and ff.

Author: Andreas Mitterecker, Djork-Arne Clevert

Maintainer: Andreas Mitterecker <mitterecker at ml.jku.at>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cn.farms")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cn.farms")

 

PDF	R Script	cn.farms: Manual for the R package
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Microarray, Software
Version	1.46.0
In Bioconductor since	BioC 2.8 (R-2.13) (12 years)
License	LGPL (>= 2.0)
Depends	R (>= 3.0), Biobase, methods, ff, oligoClasses, snow
Imports	DBI, affxparser, oligo, DNAcopy, preprocessCore, lattice
LinkingTo
Suggests	pd.mapping250k.sty, pd.mapping250k.nsp, pd.genomewidesnp.5, pd.genomewidesnp.6
SystemRequirements
Enhances
URL	http://www.bioinf.jku.at/software/cnfarms/cnfarms.html
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	cn.farms_1.46.0.tar.gz
Windows Binary	cn.farms_1.46.0.zip (64-bit only)
macOS Binary (x86_64)	cn.farms_1.46.0.tgz
macOS Binary (arm64)	cn.farms_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/cn.farms
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/cn.farms
Bioc Package Browser	https://code.bioconductor.org/browse/cn.farms/
Package Short Url	https://bioconductor.org/packages/cn.farms/
Package Downloads Report	Download Stats