biomvRCNS

DOI: 10.18129/B9.bioc.biomvRCNS  

Copy Number study and Segmentation for multivariate biological data

Bioconductor version: Release (3.16)

In this package, a Hidden Semi Markov Model (HSMM) and one homogeneous segmentation model are designed and implemented for segmentation genomic data, with the aim of assisting in transcripts detection using high throughput technology like RNA-seq or tiling array, and copy number analysis using aCGH or sequencing.

Author: Yang Du

Maintainer: Yang Du <tooyoung at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biomvRCNS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biomvRCNS")

 

PDF	R Script	biomvRCNS package introduction
PDF		Reference Manual
Text		NEWS

Details

biocViews	CopyNumberVariation, Genetics, Microarray, Sequencing, Software, Visualization, aCGH
Version	1.38.0
In Bioconductor since	BioC 2.12 (R-3.0) (10 years)
License	GPL (>= 2)
Depends	R (>= 3.5.0), IRanges, GenomicRanges, Gviz
Imports	methods, mvtnorm
LinkingTo
Suggests	cluster, parallel, GenomicFeatures, dynamicTreeCut, Rsamtools, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	biomvRCNS_1.38.0.tar.gz
Windows Binary	biomvRCNS_1.38.0.zip (64-bit only)
macOS Binary (x86_64)	biomvRCNS_1.38.0.tgz
macOS Binary (arm64)	biomvRCNS_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/biomvRCNS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/biomvRCNS
Bioc Package Browser	https://code.bioconductor.org/browse/biomvRCNS/
Package Short Url	https://bioconductor.org/packages/biomvRCNS/
Package Downloads Report	Download Stats