TurboNorm

DOI: 10.18129/B9.bioc.TurboNorm  

A fast scatterplot smoother suitable for microarray normalization

Bioconductor version: Release (3.16)

A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.

Author: Maarten van Iterson and Chantal van Leeuwen

Maintainer: Maarten van Iterson <mviterson at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TurboNorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TurboNorm")

 

PDF	R Script	TurboNorm Overview
PDF		Reference Manual
Text		NEWS

Details

biocViews	CpGIsland, DNAMethylation, MethylationArray, Microarray, Normalization, OneChannel, Preprocessing, Software, TwoChannel
Version	1.46.0
In Bioconductor since	BioC 2.8 (R-2.13) (12 years)
License	LGPL
Depends	R (>= 2.12.0), convert, limma(>= 1.7.0), marray
Imports	stats, grDevices, affy, lattice
LinkingTo
Suggests	BiocStyle, affydata
SystemRequirements
Enhances
URL	http://www.humgen.nl/MicroarrayAnalysisGroup.html
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TurboNorm_1.46.0.tar.gz
Windows Binary	TurboNorm_1.46.0.zip
macOS Binary (x86_64)	TurboNorm_1.46.0.tgz
macOS Binary (arm64)	TurboNorm_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TurboNorm
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TurboNorm
Bioc Package Browser	https://code.bioconductor.org/browse/TurboNorm/
Package Short Url	https://bioconductor.org/packages/TurboNorm/
Package Downloads Report	Download Stats