TargetSearch

DOI: 10.18129/B9.bioc.TargetSearch  

A package for the analysis of GC-MS metabolite profiling data

Bioconductor version: Release (3.16)

This packages provides a flexible, fast and accurate method for targeted pre-processing of GC-MS data. The user provides a (often very large) set of GC chromatograms and a metabolite library of targets. The package will automatically search those targets in the chromatograms resulting in a data matrix that can be used for further data analysis.

Author: Alvaro Cuadros-Inostroza [aut, cre], Jan Lisec [aut], Henning Redestig [aut], Matt Hannah [aut]

Maintainer: Alvaro Cuadros-Inostroza <acuadros+bioc at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TargetSearch")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TargetSearch")

 

PDF	R Script	RI correction extra
PDF	R Script	The TargetSearch Package
PDF		Reference Manual
Text		NEWS

Details

biocViews	DecisionTree, ImmunoOncology, MassSpectrometry, Preprocessing, Software
Version	2.0.0
In Bioconductor since	BioC 2.4 (R-2.9) (14 years)
License	GPL (>= 2)
Depends
Imports	graphics, grDevices, methods, ncdf4, stats, utils, assertthat
LinkingTo
Suggests	TargetSearchData, BiocStyle, knitr, tinytest
SystemRequirements
Enhances
URL	https://github.com/acinostroza/TargetSearch
BugReports	https://github.com/acinostroza/TargetSearch/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TargetSearch_2.0.0.tar.gz
Windows Binary	TargetSearch_2.0.0.zip
macOS Binary (x86_64)	TargetSearch_2.0.0.tgz
macOS Binary (arm64)	TargetSearch_2.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TargetSearch
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TargetSearch
Bioc Package Browser	https://code.bioconductor.org/browse/TargetSearch/
Package Short Url	https://bioconductor.org/packages/TargetSearch/
Package Downloads Report	Download Stats