TTMap

DOI: 10.18129/B9.bioc.TTMap  

Two-Tier Mapper: a clustering tool based on topological data analysis

Bioconductor version: Release (3.16)

TTMap is a clustering method that groups together samples with the same deviation in comparison to a control group. It is specially useful when the data is small. It is parameter free.

Author: Rachel Jeitziner

Maintainer: Rachel Jeitziner <rachel.jeitziner at epfl.ch>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TTMap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TTMap")

 

PDF	R Script	Manual for the TTMap library
PDF		Reference Manual

Details

biocViews	Classification, Clustering, DifferentialExpression, Microarray, MultipleComparison, Software
Version	1.20.0
In Bioconductor since	BioC 3.7 (R-3.5) (5 years)
License	GPL-2
Depends	rgl, colorRamps
Imports	grDevices, graphics, stats, utils, methods, SummarizedExperiment, Biobase
LinkingTo
Suggests	BiocStyle, airway
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TTMap_1.20.0.tar.gz
Windows Binary	TTMap_1.20.0.zip
macOS Binary (x86_64)	TTMap_1.20.0.tgz
macOS Binary (arm64)	TTMap_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TTMap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TTMap
Bioc Package Browser	https://code.bioconductor.org/browse/TTMap/
Package Short Url	https://bioconductor.org/packages/TTMap/
Package Downloads Report	Download Stats