SIMAT

DOI: 10.18129/B9.bioc.SIMAT  

GC-SIM-MS data processing and alaysis tool

Bioconductor version: Release (3.16)

This package provides a pipeline for analysis of GC-MS data acquired in selected ion monitoring (SIM) mode. The tool also provides a guidance in choosing appropriate fragments for the targets of interest by using an optimization algorithm. This is done by considering overlapping peaks from a provided library by the user.

Author: M. R. Nezami Ranjbar <nranjbar at vt.edu>

Maintainer: M. R. Nezami Ranjbar <nranjbar at vt.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SIMAT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SIMAT")

 

PDF	R Script	SIMAT Usage
PDF		Reference Manual
Text		NEWS

Details

biocViews	ImmunoOncology, MassSpectrometry, Metabolomics, Software
Version	1.30.0
In Bioconductor since	BioC 3.1 (R-3.2) (8 years)
License	GPL-2
Depends	R (>= 3.5.0), Rcpp (>= 0.11.3)
Imports	mzR, ggplot2, grid, reshape2, grDevices, stats, utils
LinkingTo
Suggests	RUnit, BiocGenerics
SystemRequirements
Enhances
URL	http://omics.georgetown.edu/SIMAT.html
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SIMAT_1.30.0.tar.gz
Windows Binary	SIMAT_1.30.0.zip (64-bit only)
macOS Binary (x86_64)	SIMAT_1.30.0.tgz
macOS Binary (arm64)	SIMAT_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SIMAT
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SIMAT
Bioc Package Browser	https://code.bioconductor.org/browse/SIMAT/
Package Short Url	https://bioconductor.org/packages/SIMAT/
Package Downloads Report	Download Stats