SELEX

DOI: 10.18129/B9.bioc.SELEX  

Functions for analyzing SELEX-seq data

Bioconductor version: Release (3.16)

Tools for quantifying DNA binding specificities based on SELEX-seq data.

Author: Chaitanya Rastogi, Dahong Liu, Lucas Melo, and Harmen J. Bussemaker

Maintainer: Harmen J. Bussemaker <hjb2004 at columbia.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SELEX")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SELEX")

 

PDF	R Script	Motif Discovery with SELEX-seq
PDF		Reference Manual

Details

biocViews	GeneRegulation, MotifAnnotation, MotifDiscovery, Software, Transcription
Version	1.30.0
In Bioconductor since	BioC 3.1 (R-3.2) (8 years)
License	GPL (>=2)
Depends	rJava (>= 0.5-0), Biostrings(>= 2.26.0)
Imports	stats, utils
LinkingTo
Suggests
SystemRequirements	Java (>= 1.5)
Enhances
URL	https://bussemakerlab.org/site/software/
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SELEX_1.30.0.tar.gz
Windows Binary	SELEX_1.30.0.zip (64-bit only)
macOS Binary (x86_64)	SELEX_1.30.0.tgz
macOS Binary (arm64)	SELEX_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SELEX
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SELEX
Bioc Package Browser	https://code.bioconductor.org/browse/SELEX/
Package Short Url	https://bioconductor.org/packages/SELEX/
Package Downloads Report	Download Stats