SCnorm

DOI: 10.18129/B9.bioc.SCnorm  

Normalization of single cell RNA-seq data

Bioconductor version: Release (3.16)

This package implements SCnorm — a method to normalize single-cell RNA-seq data.

Author: Rhonda Bacher

Maintainer: Rhonda Bacher <rbacher at ufl.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SCnorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SCnorm")

 

PDF	R Script	SCnorm Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	ImmunoOncology, Normalization, RNASeq, SingleCell, Software
Version	1.20.0
In Bioconductor since	BioC 3.6 (R-3.4) (5.5 years)
License	GPL (>= 2)
Depends	R (>= 3.4.0)
Imports	SingleCellExperiment, SummarizedExperiment, stats, methods, graphics, grDevices, parallel, quantreg, cluster, moments, data.table, BiocParallel, S4Vectors, ggplot2, forcats, BiocGenerics
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, devtools
SystemRequirements
Enhances
URL	https://github.com/rhondabacher/SCnorm
BugReports	https://github.com/rhondabacher/SCnorm/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SCnorm_1.20.0.tar.gz
Windows Binary	SCnorm_1.20.0.zip
macOS Binary (x86_64)	SCnorm_1.20.0.tgz
macOS Binary (arm64)	SCnorm_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SCnorm
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SCnorm
Bioc Package Browser	https://code.bioconductor.org/browse/SCnorm/
Package Short Url	https://bioconductor.org/packages/SCnorm/
Package Downloads Report	Download Stats