RedisParam

DOI: 10.18129/B9.bioc.RedisParam  

Provide a 'redis' back-end for BiocParallel

Bioconductor version: Release (3.16)

This package provides a Redis-based back-end for BiocParallel, enabling an alternative mechanism for distributed computation. The The 'manager' distributes tasks to a 'worker' pool through a central Redis server, rather than directly to workers as with other BiocParallel implementations. This means that the worker pool can change dynamically during job evaluation. All features of BiocParallel are supported, including reproducible random number streams, logging to the manager, and alternative 'load balancing' task distributions.

Author: Martin Morgan [aut, cre] , Jiefei Wang [aut]

Maintainer: Martin Morgan <mtmorgan.bioc at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RedisParam")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RedisParam")

 

HTML	R Script	RedisParam for Developers
HTML	R Script	Using RedisParam
PDF		Reference Manual
Text		NEWS
Text		INSTALL

Details

biocViews	Infrastructure, Software
Version	1.0.0
In Bioconductor since	BioC 3.16 (R-4.2) (< 6 months)
License	Artistic-2.0
Depends	R (>= 4.2.0), BiocParallel(>= 1.29.12)
Imports	methods, redux, withr, futile.logger
LinkingTo
Suggests	rmarkdown, knitr, testthat, BiocStyle
SystemRequirements	hiredis
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RedisParam_1.0.0.tar.gz
Windows Binary	RedisParam_1.0.0.zip
macOS Binary (x86_64)	RedisParam_1.0.0.tgz
macOS Binary (arm64)	RedisParam_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RedisParam
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RedisParam
Bioc Package Browser	https://code.bioconductor.org/browse/RedisParam/
Package Short Url	https://bioconductor.org/packages/RedisParam/
Package Downloads Report	Download Stats