Rbwa

DOI: 10.18129/B9.bioc.Rbwa  

R wrapper for BWA-backtrack and BWA-MEM aligners

Bioconductor version: Release (3.16)

Provides an R wrapper for BWA alignment algorithms. Both BWA-backtrack and BWA-MEM are available. Convenience function to build a BWA index from a reference genome is also provided. Currently not supported for Windows machines.

Author: Jean-Philippe Fortin [aut, cre]

Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rbwa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rbwa")

 

HTML	R Script	An introduction to Rbwa
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Alignment, Sequencing, Software
Version	1.2.0
In Bioconductor since	BioC 3.15 (R-4.2) (1 year)
License	MIT + file LICENSE
Depends	R (>= 4.1)
Imports
LinkingTo
Suggests	testthat, BiocStyle, knitr, rmarkdown
SystemRequirements	GNU make
Enhances
URL	https://github.com/Jfortin1/Rbwa
BugReports	https://github.com/Jfortin1/Rbwa/issues
Depends On Me
Imports Me	crisprBwa
Suggests Me	crisprDesign
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Rbwa_1.2.0.tar.gz
Windows Binary
macOS Binary (x86_64)	Rbwa_1.2.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/Rbwa
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Rbwa
Bioc Package Browser	https://code.bioconductor.org/browse/Rbwa/
Package Short Url	https://bioconductor.org/packages/Rbwa/
Package Downloads Report	Download Stats