RUVnormalize

DOI: 10.18129/B9.bioc.RUVnormalize  

RUV for normalization of expression array data

Bioconductor version: Release (3.16)

RUVnormalize is meant to remove unwanted variation from gene expression data when the factor of interest is not defined, e.g., to clean up a dataset for general use or to do any kind of unsupervised analysis.

Author: Laurent Jacob

Maintainer: Laurent Jacob <laurent.jacob at univ-lyon1.fr>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RUVnormalize")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RUVnormalize")

 

PDF	R Script	RUVnormalize
PDF		Reference Manual
Text		NEWS

Details

biocViews	Normalization, Software, StatisticalMethod
Version	1.32.0
In Bioconductor since	BioC 3.0 (R-3.1) (8.5 years)
License	GPL-3
Depends	R (>= 2.10.0)
Imports	RUVnormalizeData, Biobase
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Enhances	spams
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RUVnormalize_1.32.0.tar.gz
Windows Binary	RUVnormalize_1.32.0.zip
macOS Binary (x86_64)	RUVnormalize_1.32.0.tgz
macOS Binary (arm64)	RUVnormalize_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RUVnormalize
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RUVnormalize
Bioc Package Browser	https://code.bioconductor.org/browse/RUVnormalize/
Package Short Url	https://bioconductor.org/packages/RUVnormalize/
Package Downloads Report	Download Stats