PloGO2

DOI: 10.18129/B9.bioc.PloGO2  

Plot Gene Ontology and KEGG pathway Annotation and Abundance

Bioconductor version: Release (3.16)

Functions for enrichment analysis and plotting gene ontology or KEGG pathway information for multiple data subsets at the same time. It also enables encorporating multiple conditions and abundance data.

Author: Dana Pascovici, Jemma Wu

Maintainer: Jemma Wu <jemma.wu at mq.edu.au>, Dana Pascovici <dana.pascovici at mq.edu.au>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PloGO2")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PloGO2")

 

PDF	R Script	PloGO2_vignette.pdf
PDF	R Script	PloGO2_with_WGNCA_vignette.pdf
PDF		Reference Manual

Details

biocViews	Annotation, Clustering, GO, GeneSetEnrichment, KEGG, MultipleComparison, Pathways, Software, Visualization
Version	1.10.0
In Bioconductor since	BioC 3.11 (R-4.0) (3 years)
License	GPL-2
Depends	R (>= 4.0), GO.db, GOstats
Imports	lattice, httr, openxlsx, xtable
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PloGO2_1.10.0.tar.gz
Windows Binary	PloGO2_1.10.0.zip (64-bit only)
macOS Binary (x86_64)	PloGO2_1.10.0.tgz
macOS Binary (arm64)	PloGO2_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PloGO2
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PloGO2
Bioc Package Browser	https://code.bioconductor.org/browse/PloGO2/
Package Short Url	https://bioconductor.org/packages/PloGO2/
Package Downloads Report	Download Stats