Omixer

DOI: 10.18129/B9.bioc.Omixer  

Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies

Bioconductor version: Release (3.16)

Omixer - an Bioconductor package for multivariate and reproducible sample randomization, which ensures optimal sample distribution across batches with well-documented methods. It outputs lab-friendly sample layouts, reducing the risk of sample mixups when manually pipetting randomized samples.

Author: Lucy Sinke [cre, aut]

Maintainer: Lucy Sinke <l.j.sinke at lumc.nl>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Omixer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Omixer")

 

HTML	R Script	my-vignette
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataRepresentation, ExperimentalDesign, QualityControl, Software, Visualization
Version	1.8.0
In Bioconductor since	BioC 3.12 (R-4.0) (2.5 years)
License	MIT + file LICENSE
Depends	R (>= 4.0.0)
Imports	dplyr, ggplot2, forcats, tibble, gridExtra, magrittr, readr, tidyselect, grid, stats, stringr
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle, magick, testthat
SystemRequirements
Enhances
URL
BugReports	https://github.com/molepi/Omixer/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Omixer_1.8.0.tar.gz
Windows Binary	Omixer_1.8.0.zip
macOS Binary (x86_64)	Omixer_1.8.0.tgz
macOS Binary (arm64)	Omixer_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Omixer
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Omixer
Bioc Package Browser	https://code.bioconductor.org/browse/Omixer/
Package Short Url	https://bioconductor.org/packages/Omixer/
Package Downloads Report	Download Stats