MouseFM

DOI: 10.18129/B9.bioc.MouseFM  

In-silico methods for genetic finemapping in inbred mice

Bioconductor version: Release (3.16)

This package provides methods for genetic finemapping in inbred mice by taking advantage of their very high homozygosity rate (>95%).

Author: Matthias Munz [aut, cre] , Inken Wohlers [aut] , Hauke Busch [aut]

Maintainer: Matthias Munz <matthias.munz at gmx.de>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MouseFM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseFM")

 

HTML	R Script	Fetch
HTML	R Script	Finemapping
HTML	R Script	Prioritization
PDF		Reference Manual
Text		NEWS

Details

biocViews	BiomedicalInformatics, FunctionalGenomics, GenePrediction, GeneTarget, Genetics, GenomicVariation, MathematicalBiology, MultipleComparison, PatternLogic, SNP, Software, SystemsBiology, VariantAnnotation
Version	1.8.0
In Bioconductor since	BioC 3.12 (R-4.0) (2.5 years)
License	GPL-3
Depends	R (>= 4.0.0)
Imports	httr, curl, GenomicRanges, dplyr, ggplot2, reshape2, scales, gtools, tidyr, data.table, jsonlite, rlist, GenomeInfoDb, methods, biomaRt, stats, IRanges
LinkingTo
Suggests	BiocStyle, testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL
BugReports	https://github.com/matmu/MouseFM/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MouseFM_1.8.0.tar.gz
Windows Binary	MouseFM_1.8.0.zip
macOS Binary (x86_64)	MouseFM_1.8.0.tgz
macOS Binary (arm64)	MouseFM_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MouseFM
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MouseFM
Bioc Package Browser	https://code.bioconductor.org/browse/MouseFM/
Package Short Url	https://bioconductor.org/packages/MouseFM/
Package Downloads Report	Download Stats