MetaboCoreUtils

DOI: 10.18129/B9.bioc.MetaboCoreUtils  

Core Utils for Metabolomics Data

Bioconductor version: Release (3.16)

MetaboCoreUtils defines metabolomics-related core functionality provided as low-level functions to allow a data structure-independent usage across various R packages. This includes functions to calculate between ion (adduct) and compound mass-to-charge ratios and masses or functions to work with chemical formulas. The package provides also a set of adduct definitions and information on some commercially available internal standard mixes commonly used in MS experiments.

Author: Johannes Rainer [aut, cre] , Michael Witting [aut] , Andrea Vicini [aut], Liesa Salzer [ctb] , Sebastian Gibb [ctb] , Michael Stravs [ctb] , Roger Gine [aut]

Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetaboCoreUtils")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaboCoreUtils")

 

HTML	R Script	Core Utils for Metabolomics Data
PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, MassSpectrometry, Metabolomics, Software
Version	1.6.0
In Bioconductor since	BioC 3.13 (R-4.1) (2 years)
License	Artistic-2.0
Depends	R (>= 4.0)
Imports	utils, MsCoreUtils
LinkingTo
Suggests	BiocStyle, testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/RforMassSpectrometry/MetaboCoreUtils
BugReports	https://github.com/RforMassSpectrometry/MetaboCoreUtils/issues
Depends On Me
Imports Me	CompoundDb, MetaboAnnotation, MobilityTransformR
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MetaboCoreUtils_1.6.0.tar.gz
Windows Binary	MetaboCoreUtils_1.6.0.zip
macOS Binary (x86_64)	MetaboCoreUtils_1.6.0.tgz
macOS Binary (arm64)	MetaboCoreUtils_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MetaboCoreUtils
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MetaboCoreUtils
Bioc Package Browser	https://code.bioconductor.org/browse/MetaboCoreUtils/
Package Short Url	https://bioconductor.org/packages/MetaboCoreUtils/
Package Downloads Report	Download Stats