MPFE

DOI: 10.18129/B9.bioc.MPFE  

Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data

Bioconductor version: Release (3.16)

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.

Author: Peijie Lin, Sylvain Foret, Conrad Burden

Maintainer: Conrad Burden <conrad.burden at anu.edu.au>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MPFE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MPFE")

 

PDF	R Script	MPFE
PDF		Reference Manual
Text		README

Details

biocViews	DNAMethylation, HighThroughputSequencingData, MethylSeq, Software
Version	1.34.0
In Bioconductor since	BioC 3.0 (R-3.1) (8.5 years)
License	GPL (>= 3)
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MPFE_1.34.0.tar.gz
Windows Binary	MPFE_1.34.0.zip
macOS Binary (x86_64)	MPFE_1.34.0.tgz
macOS Binary (arm64)	MPFE_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MPFE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MPFE
Bioc Package Browser	https://code.bioconductor.org/browse/MPFE/
Package Short Url	https://bioconductor.org/packages/MPFE/
Package Downloads Report	Download Stats