MOGAMUN

DOI: 10.18129/B9.bioc.MOGAMUN  

MOGAMUN: A Multi-Objective Genetic Algorithm to Find Active Modules in Multiplex Biological Networks

Bioconductor version: Release (3.16)

MOGAMUN is a multi-objective genetic algorithm that identifies active modules in a multiplex biological network. This allows analyzing different biological networks at the same time. MOGAMUN is based on NSGA-II (Non-Dominated Sorting Genetic Algorithm, version II), which we adapted to work on networks.

Author: Elva-María Novoa-del-Toro [aut, cre]

Maintainer: Elva-María Novoa-del-Toro <elvanov at hotmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MOGAMUN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MOGAMUN")

 

HTML	R Script	Finding active modules with MOGAMUN
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	BiomedicalInformatics, Clustering, DifferentialExpression, GraphAndNetwork, Network, Software, SystemsBiology, Transcriptomics
Version	1.8.0
In Bioconductor since	BioC 3.12 (R-4.0) (2.5 years)
License	GPL-3 + file LICENSE
Depends
Imports	stats, utils, RCy3, stringr, graphics, grDevices, RUnit, BiocParallel, igraph
LinkingTo
Suggests	knitr, markdown
SystemRequirements
Enhances
URL	https://github.com/elvanov/MOGAMUN
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MOGAMUN_1.8.0.tar.gz
Windows Binary	MOGAMUN_1.8.0.zip
macOS Binary (x86_64)	MOGAMUN_1.8.0.tgz
macOS Binary (arm64)	MOGAMUN_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MOGAMUN
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MOGAMUN
Bioc Package Browser	https://code.bioconductor.org/browse/MOGAMUN/
Package Short Url	https://bioconductor.org/packages/MOGAMUN/
Package Downloads Report	Download Stats