IWTomics

DOI: 10.18129/B9.bioc.IWTomics  

Interval-Wise Testing for Omics Data

Bioconductor version: Release (3.16)

Implementation of the Interval-Wise Testing (IWT) for omics data. This inferential procedure tests for differences in "Omics" data between two groups of genomic regions (or between a group of genomic regions and a reference center of symmetry), and does not require fixing location and scale at the outset.

Author: Marzia A Cremona, Alessia Pini, Francesca Chiaromonte, Simone Vantini

Maintainer: Marzia A Cremona <mac78 at psu.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("IWTomics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IWTomics")

 

PDF	R Script	Introduction to IWTomics
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, DifferentialExpression, DifferentialMethylation, DifferentialPeakCalling, GenomeAnnotation, MultipleComparison, Software, StatisticalMethod
Version	1.22.0
In Bioconductor since	BioC 3.5 (R-3.4) (6 years)
License	GPL (>=2)
Depends	R (>= 3.5.0), GenomicRanges
Imports	parallel, gtable, grid, graphics, methods, IRanges, KernSmooth, fda, S4Vectors, grDevices, stats, utils, tools
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	IWTomics_1.22.0.tar.gz
Windows Binary	IWTomics_1.22.0.zip
macOS Binary (x86_64)	IWTomics_1.22.0.tgz
macOS Binary (arm64)	IWTomics_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/IWTomics
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/IWTomics
Bioc Package Browser	https://code.bioconductor.org/browse/IWTomics/
Package Short Url	https://bioconductor.org/packages/IWTomics/
Package Downloads Report	Download Stats