GCSscore

DOI: 10.18129/B9.bioc.GCSscore  

GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arrays

Bioconductor version: Release (3.16)

For differential expression analysis of 3'IVT and WT-style microarrays from Affymetrix/Thermo-Fisher. Based on S-score algorithm originally described by Zhang et al 2002.

Author: Guy M. Harris & Shahroze Abbas & Michael F. Miles

Maintainer: Guy M. Harris <harrisgm at vcu.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GCSscore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GCSscore")

 

PDF	R Script	SScore primer
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, DifferentialExpression, Microarray, OneChannel, ProprietaryPlatforms, Software
Version	1.12.0
In Bioconductor since	BioC 3.10 (R-3.6) (3.5 years)
License	GPL (>=3)
Depends	R (>= 3.6)
Imports	BiocManager, Biobase, utils, methods, RSQLite, devtools, dplR, stringr, graphics, stats, affxparser, data.table
LinkingTo
Suggests	siggenes, GEOquery, R.utils
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GCSscore_1.12.0.tar.gz
Windows Binary	GCSscore_1.12.0.zip (64-bit only)
macOS Binary (x86_64)	GCSscore_1.12.0.tgz
macOS Binary (arm64)	GCSscore_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GCSscore
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GCSscore
Bioc Package Browser	https://code.bioconductor.org/browse/GCSscore/
Package Short Url	https://bioconductor.org/packages/GCSscore/
Package Downloads Report	Download Stats