CTDquerier

DOI: 10.18129/B9.bioc.CTDquerier  

This package is for version 3.16 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CTDquerier.

Package for CTDbase data query, visualization and downstream analysis

Bioconductor version: Release (3.16)

Package to retrieve and visualize data from the Comparative Toxicogenomics Database (http://ctdbase.org/). The downloaded data is formated as DataFrames for further downstream analyses.

Author: Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut], Xavier Escribà-Montagut [cre]

Maintainer: Xavier Escribà-Montagut <xavier.escriba at isglobal.org>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CTDquerier")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual
Text		LICENSE

Details

biocViews	BiomedicalInformatics, DataImport, DataRepresentation, GO, GeneSetEnrichment, Infrastructure, KEGG, Network, NetworkEnrichment, Pathways, Software
Version	2.6.0
In Bioconductor since	BioC 3.7 (R-3.5) (5 years)
License	MIT + file LICENSE
Depends	R (>= 4.1)
Imports	RCurl, stringr, S4Vectors, stringdist, ggplot2, igraph, utils, grid, gridExtra, methods, stats, BiocFileCache
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CTDquerier_2.6.0.tar.gz
Windows Binary	CTDquerier_2.6.0.zip
macOS Binary (x86_64)	CTDquerier_2.6.0.tgz
macOS Binary (arm64)	CTDquerier_2.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CTDquerier
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CTDquerier
Bioc Package Browser	https://code.bioconductor.org/browse/CTDquerier/
Package Short Url	https://bioconductor.org/packages/CTDquerier/
Package Downloads Report	Download Stats