CNTools

DOI: 10.18129/B9.bioc.CNTools  

Convert segment data into a region by sample matrix to allow for other high level computational analyses.

Bioconductor version: Release (3.16)

This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data

Author: Jianhua Zhang

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CNTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNTools")

 

PDF	R Script	NCTools HowTo
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Microarray, Software
Version	1.54.0
In Bioconductor since	BioC 2.5 (R-2.10) (13.5 years)
License	LGPL
Depends	R (>= 2.10), methods, tools, stats, genefilter
Imports
LinkingTo
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SystemRequirements
Enhances
URL
Depends On Me	cghMCR
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CNTools_1.54.0.tar.gz
Windows Binary	CNTools_1.54.0.zip (64-bit only)
macOS Binary (x86_64)	CNTools_1.54.0.tgz
macOS Binary (arm64)	CNTools_1.54.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CNTools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CNTools
Bioc Package Browser	https://code.bioconductor.org/browse/CNTools/
Package Short Url	https://bioconductor.org/packages/CNTools/
Package Downloads Report	Download Stats